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Since I can't really reproduce the problem, I am (still) flying blind. If your are still dealing with this problem, here are addition things to try.

This is a sledgehammer approach. It will cause dnf to complain until the next successful update about changes made outside of dnf.

Make sure dnf-plugins-core package is installed.

dnf list installed dnf-plugins-core

If it is not installed, install it.

sudo dnf install dnf-plugins-core

Download the chkconfig-1.8 RPM file.

dnf download chkconfig-1.8

Install this package using the rpm --install --replacefiles --replacepkgs command or rpm --install --force command.

sudo rpm --install --replacefiles --replacepkgs chkconfig-1.8-1.fc25.x86_64.rpm


sudo rpm --install --force chkconfig-1.8-1.fc25.x86_64.rpm

If the package successfully installs, see what is reported by dnf as installed.

dnf list installed chkconfig

If both versions are listed use dnf to remove the chkconfig-1.7. If this succeeds, to make sure chkconfig-1.8 is consistent, I would reinstall chkconfig-1.8.

sudo dnf remove chkconfig-1.7

sudo dnf reinstall chkconfig-1.8

Again, I hope it solves the problem.