Login freezes

Hello,

I was away from my computer yesterday so the screen locked. I believe the machine went into hibernate. When I tried to login again GDM was really slow and eventually froze. Since then I cannot log in. Booting takes very long and then GDM is basically dead. E.g. the login name is not showing.

I was able to mount the root device from a live usb stick and chroot into it so I could set a root password and grab the logs. A friend suggested to relabel with SELinux but that did not help. Here are the logs.

Here are the first few lines of journalctl -r. It seems there are a lot of time outs.

Mar 25 08:27:40 localhost.localdomain systemd[6389]: Starting Cleanup of User's Temporary Files and Directories...
Mar 25 08:27:40 localhost.localdomain systemd[6389]: Created slice User Background Tasks Slice.
Mar 25 08:26:58 localhost.localdomain gsd-color[6827]: failed to get devices: Timeout was reached
Mar 25 08:26:58 localhost.localdomain gsd-color[6827]: failed to create device: Timeout was reached
Mar 25 08:26:33 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Successfully activated service 'org.gnome.Shell.Screencast'
Mar 25 08:26:33 localhost.localdomain gsd-media-keys[6839]: Unable to inhibit suspend: GDBus.Error:org.freedesktop.DBus.Error.NoReply: Method call timed out
Mar 25 08:26:33 localhost.localdomain gsd-power[6850]: Unable to inhibit suspend: GDBus.Error:org.freedesktop.DBus.Error.NoReply: Method call timed out
Mar 25 08:26:33 localhost.localdomain gsd-media-keys[6839]: Unable to inhibit keypresses: GDBus.Error:org.freedesktop.DBus.Error.NoReply: Method call timed out
Mar 25 08:26:33 localhost.localdomain gsd-media-keys[6839]: Failed to grab accelerator for keybinding settings:hibernate
Mar 25 08:26:33 localhost.localdomain gsd-media-keys[6839]: Failed to grab accelerator for keybinding settings:playback-repeat
Mar 25 08:26:33 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Activating service name='org.gnome.Shell.Screencast' requested by ':1.25' (uid=42 pid=6839 comm="/usr/libexec/gsd-media-keys " label="system_u:system_r:xdm_t:s0-s0:c0.c1023")
Mar 25 08:26:33 localhost.localdomain gsd-color[6827]: Timeout was reached
Mar 25 08:26:33 localhost.localdomain gsd-color[6827]: Timeout was reached
Mar 25 08:26:33 localhost.localdomain gsd-keyboard[6829]: Failed to contact localed: Error calling StartServiceByName for org.freedesktop.locale1: Timeout was reached
Mar 25 08:26:20 localhost.localdomain kernel: nf_conntrack: default automatic helper assignment has been turned off for security reasons and CT-based firewall rule not found. Use the iptables CT target to attach helpers instead.
Mar 25 08:26:08 localhost.localdomain gnome-session-binary[6481]: Entering running state
Mar 25 08:26:08 localhost.localdomain spice-vdagent[7037]: vdagent virtio channel /dev/virtio-ports/com.redhat.spice.0 does not exist, exiting
Mar 25 08:26:08 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Successfully activated service 'org.gnome.ScreenSaver'
Mar 25 08:26:08 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Activating service name='org.gnome.ScreenSaver' requested by ':1.23' (uid=42 pid=6850 comm="/usr/libexec/gsd-power " label="system_u:system_r:xdm_t:s0-s0:c0.c1023")
Mar 25 08:26:07 localhost.localdomain gsd-media-keys[6839]: AT-SPI: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.
Mar 25 08:26:07 localhost.localdomain gsd-wacom[6826]: AT-SPI: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.
Mar 25 08:26:07 localhost.localdomain gsd-keyboard[6829]: AT-SPI: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.
Mar 25 08:26:07 localhost.localdomain gsd-color[6827]: AT-SPI: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.
Mar 25 08:26:07 localhost.localdomain gsd-power[6850]: AT-SPI: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.
Mar 25 08:26:07 localhost.localdomain gnome-session-f[6822]: AT-SPI: Error retrieving accessibility bus address: org.freedesktop.DBus.Error.NoReply: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.
Mar 25 08:25:43 localhost.localdomain gnome-shell[6540]: Registering session with GDM
Mar 25 08:25:43 localhost.localdomain org.gnome.Shell.desktop[6981]: Errors from xkbcomp are not fatal to the X server
Mar 25 08:25:43 localhost.localdomain org.gnome.Shell.desktop[6981]: >                   X11 cannot support keycodes above 255.
Mar 25 08:25:43 localhost.localdomain org.gnome.Shell.desktop[6981]: > Warning:          Unsupported maximum keycode 708, clipping.
Mar 25 08:25:43 localhost.localdomain org.gnome.Shell.desktop[6981]: The XKEYBOARD keymap compiler (xkbcomp) reports:
Mar 25 08:25:43 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Successfully activated service 'org.freedesktop.portal.IBus'
Mar 25 08:25:43 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Activating service name='org.freedesktop.portal.IBus' requested by ':1.33' (uid=42 pid=6962 comm="ibus-daemon --panel disable -r --xim " label="system_u:system_r:xdm_t:s0-s0:c0.c1023")
Mar 25 08:25:42 localhost.localdomain gnome-shell[6540]: JS ERROR: Gio.IOErrorEnum: Error calling StartServiceByName for net.reactivated.Fprint: Timeout was reached
                                                         _injectToMethod/klass[method]@resource:///org/gnome/gjs/modules/core/overrides/Gio.js:273:25
                                                         _makeProxyWrapper/<@resource:///org/gnome/gjs/modules/core/overrides/Gio.js:250:17
                                                         ShellUserVerifier@resource:///org/gnome/shell/gdm/util.js:154:31
                                                         _init@resource:///org/gnome/shell/gdm/authPrompt.js:72:30
                                                         _init@resource:///org/gnome/shell/gdm/loginDialog.js:446:28
                                                         _ensureUnlockDialog@resource:///org/gnome/shell/ui/screenShield.js:422:28
                                                         showDialog@resource:///org/gnome/shell/ui/screenShield.js:350:14
                                                         _initializeUI/<@resource:///org/gnome/shell/ui/main.js:279:26
                                                         _prepareStartupAnimation@resource:///org/gnome/shell/ui/layout.js:684:14
                                                         _loadBackground/signalId</id<@resource:///org/gnome/shell/ui/layout.js:621:22
Mar 25 08:25:42 localhost.localdomain kernel: rfkill: input handler disabled
Mar 25 08:25:41 localhost.localdomain chronyd[4691]: Selected source 192.168.178.1
Mar 25 08:25:20 localhost.localdomain rtkit-daemon[4621]: Warning: PolicyKit call failed: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.
Mar 25 08:25:18 localhost.localdomain cupsd[5676]: REQUEST localhost - - "POST / HTTP/1.1" 200 359 Create-Printer-Subscriptions successful-ok
Mar 25 08:25:17 localhost.localdomain gsd-sharing[6823]: Failed to StopUnit service: GDBus.Error:org.freedesktop.DBus.Error.Spawn.ChildExited: Process org.freedesktop.systemd1 exited with status 1
Mar 25 08:25:17 localhost.localdomain gsd-sharing[6823]: Failed to StopUnit service: GDBus.Error:org.freedesktop.DBus.Error.Spawn.ChildExited: Process org.freedesktop.systemd1 exited with status 1
Mar 25 08:25:17 localhost.localdomain gsd-sharing[6823]: Failed to StopUnit service: GDBus.Error:org.freedesktop.DBus.Error.Spawn.ChildExited: Process org.freedesktop.systemd1 exited with status 1
Mar 25 08:25:17 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Activated service 'org.freedesktop.systemd1' failed: Process org.freedesktop.systemd1 exited with status 1
Mar 25 08:25:17 localhost.localdomain /usr/libexec/gdm-wayland-session[6479]: dbus-daemon[6479]: [session uid=42 pid=6479] Activating service name='org.freedesktop.systemd1' requested by ':1.18' (uid=42 pid=6823 comm="/usr/libexec/gsd-sharing " label="system_u:system_r:xdm_t:s0-s0:c0.c1023")
Mar 25 08:25:17 localhost.localdomain gnome-shell[6540]: Error looking up permission: GDBus.Error:org.freedesktop.portal.Error.NotFound: No entry for geolocation
Mar 25 08:25:17 localhost.localdomain gnome-shell[6540]: Could not get properties from org.freedesktop.locale1
Mar 25 08:25:17 localhost.localdomain gnome-shell[6540]: Error calling StartServiceByName for org.freedesktop.PackageKit: Timeout was reached
Mar 25 08:25:17 localhost.localdomain pipewire-media-session[6795]: mod.rtkit: could not make thread realtime: Input/output error
Mar 25 08:25:17 localhost.localdomain pipewire-media-session[6795]: mod.rtkit: RTKit error: org.freedesktop.DBus.Error.NoReply
Mar 25 08:25:17 localhost.localdomain gnome-session-binary[6481]: WARNING: Application 'org.gnome.Shell.desktop' failed to register before timeout
Mar 25 08:25:17 localhost.localdomain gnome-session[6481]: gnome-session-binary[6481]: WARNING: Application 'org.gnome.Shell.desktop' failed to register before timeout
Mar 25 08:25:17 localhost.localdomain gnome-session[6481]: gnome-session-binary[6481]: WARNING: Calling CanHibernate failed. Check that logind is properly installed and pam_systemd is getting used at login.
Mar 25 08:25:17 localhost.localdomain gnome-session-binary[6481]: WARNING: Calling CanHibernate failed. Check that logind is properly installed and pam_systemd is getting used at login.
Mar 25 08:25:17 localhost.localdomain gnome-session-binary[6481]: Unrecoverable failure in required component org.gnome.Shell.desktop
Mar 25 08:25:17 localhost.localdomain systemd-logind[4746]: Failed to get load state of hibernate.target: Connection timed out
Mar 25 08:24:52 localhost.localdomain rtkit-daemon[4621]: Supervising 0 threads of 0 processes of 0 users.
Mar 25 08:24:52 localhost.localdomain rtkit-daemon[4621]: Supervising 0 threads of 0 processes of 0 users.
Mar 25 08:24:52 localhost.localdomain rtkit-daemon[4621]: Warning: PolicyKit call failed: Did not receive a reply. Possible causes include: the remote application did not send a reply, the message bus security policy blocked the reply, the reply timeout expired, or the network connection was broken.

Is there any chance I can save the system? The home directory is on another partition so I could reinstall. Thanks for your help!